Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs111505600 chr5:74352615 T/A 1.94E-14 130 43.68 39.23 4.92 KM Plot
TGCT rs11153626 chr6:117071569 G/A 0.00014 131 43.68 37.65 34.7 KM Plot
TGCT rs111935448 chr16:30919807 C/T 1.72E-13 132 39.38 81.3 17.1 KM Plot
TGCT rs112085062 chr2:29494057 T/C 0 134 42.27 25.02 0.57 KM Plot
TGCT rs112104474 chr2:29506828 T/G 0 134 42.27 25.02 0.57 KM Plot
TGCT rs112124352 chr5:74424591 G/A 3.22E-14 129 43.68 32.37 4.92 KM Plot
TGCT rs112181044 chr6:28329677 C/T 0 134 45.83 29.65 0.57 KM Plot
TGCT rs112249387 chr6:157022967 C/CA 0.000125 133 40.57 64.8 59.27 KM Plot
TGCT rs11236166 chr11:70251812 A/G 8.12E-6 134 45.83 36.1 47.13 KM Plot
TGCT rs112464447 chr19:37311663 T/C 0 130 38.2 55.8 0.57 KM Plot
TGCT rs11250252 chr10:1124939 G/C 2.26E-13 132 42.03 66.9 17.1 KM Plot
TGCT rs11250264 chr10:1151723 A/C 1.35E-13 134 42.03 66.9 17.1 KM Plot
TGCT rs11250274 chr10:1171354 T/C 2.86E-13 131 40.57 66.9 17.1 KM Plot
TGCT rs11250275 chr10:1171823 A/G 1.36E-13 134 17.1 66.9 42.03 KM Plot
TGCT rs112528318 chr5:74581395 A/G 2.0E-5 127 45.1 28.8 9.27 KM Plot